Variant report

Variant	rs2043885
Chromosome Location	chr2:124856339-124856340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1017462	0.87[YRI][hapmap]
rs11123021	0.89[CEU][hapmap];0.86[YRI][hapmap]
rs11679532	0.93[YRI][hapmap];0.90[AFR][1000 genomes]
rs11679636	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs11693515	0.93[YRI][hapmap]
rs11896523	0.85[YRI][hapmap]
rs11896568	0.83[CEU][hapmap]
rs13032868	0.89[AFR][1000 genomes]
rs1439134	0.84[CEU][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs1439135	0.80[AFR][1000 genomes]
rs1866479	0.80[AFR][1000 genomes]
rs1898787	0.82[CEU][hapmap];0.87[YRI][hapmap]
rs2043886	0.87[YRI][hapmap]
rs2901197	0.82[CEU][hapmap];0.86[YRI][hapmap]
rs4340523	0.82[CEU][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs4456715	0.82[CEU][hapmap];0.86[YRI][hapmap]
rs4588195	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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