The 2.0 version of rSNPBase

Variant report

Variant rs12473999
Chromosome Location chr2:173321944-173321945
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:173307400-173322400 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr2:173310800-173322400 Weak transcription Thymus Thymus
3 chr2:173312200-173323600 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr2:173313600-173323400 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr2:173315200-173324800 Genic enhancers NHEK skin
6 chr2:173316000-173322800 Enhancers ES-I3 Cell Line embryonic stem cell
7 chr2:173316200-173323400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
8 chr2:173316200-173323800 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr2:173317000-173322000 Genic enhancers Primary T cells from cord blood blood
10 chr2:173317000-173323800 Enhancers Stomach Mucosa stomach
11 chr2:173317200-173322600 Weak transcription Brain Anterior Caudate brain
12 chr2:173317200-173325400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
13 chr2:173317600-173326000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr2:173317600-173326000 Weak transcription Brain Substantia Nigra brain
15 chr2:173317800-173323000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr2:173318200-173322600 Weak transcription Psoas Muscle Psoas
17 chr2:173318400-173322600 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr2:173318800-173326200 Enhancers Primary T helper cells fromperipheralblood blood
19 chr2:173319000-173322000 Enhancers Primary neutrophils fromperipheralblood blood
20 chr2:173319200-173330600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr2:173319600-173324800 Enhancers Fetal Thymus thymus
22 chr2:173319800-173326400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr2:173320000-173325400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr2:173320200-173326600 Enhancers Duodenum Mucosa Duodenum
25 chr2:173320400-173324400 Weak transcription HUVEC blood vessel
26 chr2:173320600-173322000 Weak transcription Primary hematopoietic stem cells blood
27 chr2:173320600-173327200 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr2:173320800-173322000 Enhancers Spleen Spleen
29 chr2:173320800-173322200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr2:173320800-173325400 Enhancers HMEC breast
31 chr2:173320800-173326200 Weak transcription Placenta Amnion Placenta Amnion
32 chr2:173321000-173324400 Weak transcription Primary T regulatory cells fromperipheralblood blood
33 chr2:173321000-173325400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr2:173321000-173326000 Weak transcription HepG2 liver
35 chr2:173321000-173326400 Weak transcription Right Ventricle heart
36 chr2:173321000-173328000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr2:173321200-173322400 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr2:173321200-173322400 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr2:173321200-173323200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
40 chr2:173321200-173323200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr2:173321200-173324400 Weak transcription Primary monocytes fromperipheralblood blood
42 chr2:173321200-173324400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
43 chr2:173321200-173324600 Weak transcription Monocytes-CD14+_RO01746 blood
44 chr2:173321200-173325200 Weak transcription Hela-S3 cervix
45 chr2:173321200-173325400 Enhancers Primary T helper naive cells from peripheral blood blood
46 chr2:173321200-173325800 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr2:173321200-173325800 Enhancers Primary T helper cells PMA-I stimulated --
48 chr2:173321200-173326200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
49 chr2:173321200-173326200 Weak transcription Skeletal Muscle Female skeletal muscle
50 chr2:173321200-173326400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015