Variant report

Variant	rs12474459
Chromosome Location	chr2:76744780-76744781
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10496204	0.92[ASN][1000 genomes]
rs10519330	0.91[ASN][1000 genomes]
rs11126536	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126537	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11126538	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11679162	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12623421	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13002864	0.96[ASN][1000 genomes]
rs13010949	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13011427	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13012727	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13033650	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13033844	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13034021	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17012738	0.80[ASN][1000 genomes]
rs17012831	0.96[ASN][1000 genomes]
rs17491623	0.96[ASN][1000 genomes]
rs17517504	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2091716	0.94[ASN][1000 genomes]
rs2178520	0.91[ASN][1000 genomes]
rs2222848	0.86[ASN][1000 genomes]
rs2860769	0.90[ASN][1000 genomes]
rs2860770	0.91[ASN][1000 genomes]
rs34117684	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34475125	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34763136	0.80[ASN][1000 genomes]
rs35041598	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35289637	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35412086	0.80[ASN][1000 genomes]
rs35683467	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35822600	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36005302	0.80[ASN][1000 genomes]
rs36064715	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55718418	0.86[ASN][1000 genomes]
rs55765515	1.00[ASN][1000 genomes]
rs55799622	0.99[ASN][1000 genomes]
rs60507784	0.98[ASN][1000 genomes]
rs62166048	0.92[ASN][1000 genomes]
rs62167487	1.00[ASN][1000 genomes]
rs62167489	0.99[ASN][1000 genomes]
rs6547087	0.94[ASN][1000 genomes]
rs72809040	0.89[ASN][1000 genomes]
rs72809043	0.89[ASN][1000 genomes]
rs72809046	0.91[ASN][1000 genomes]
rs72809050	0.92[ASN][1000 genomes]
rs72809069	0.94[ASN][1000 genomes]
rs72810811	0.94[ASN][1000 genomes]
rs72810819	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72810824	0.96[ASN][1000 genomes]
rs7422459	0.92[ASN][1000 genomes]
rs7424489	0.90[ASN][1000 genomes]
rs7585094	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76744000-76745000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:76744000-76745400	Enhancers	Liver	Liver

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