Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11126523	0.87[ASN][1000 genomes]
rs11126536	0.80[ASN][1000 genomes]
rs11126537	0.80[ASN][1000 genomes]
rs11126538	0.80[ASN][1000 genomes]
rs11679162	0.80[ASN][1000 genomes]
rs12474459	0.80[ASN][1000 genomes]
rs12623421	0.81[ASN][1000 genomes]
rs13011427	0.80[ASN][1000 genomes]
rs13012727	0.80[ASN][1000 genomes]
rs13033650	0.80[ASN][1000 genomes]
rs17517504	0.80[ASN][1000 genomes]
rs2178519	0.94[ASN][1000 genomes]
rs2860780	0.96[ASN][1000 genomes]
rs34258481	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34475125	0.80[ASN][1000 genomes]
rs34763136	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35041598	0.80[ASN][1000 genomes]
rs35289637	0.80[ASN][1000 genomes]
rs35412086	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35822600	0.80[ASN][1000 genomes]
rs36005302	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36064715	0.80[ASN][1000 genomes]
rs4306737	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs55765515	0.80[ASN][1000 genomes]
rs62167487	0.80[ASN][1000 genomes]
rs6738224	0.92[ASN][1000 genomes]
rs72810819	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757809	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2759064	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1013614	chr2:76624220-76715121	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv582227	chr2:76662404-76712789	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3356431	chr2:76697346-76714281	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76694800-76705800	Weak transcription	H1 Cell Line	embryonic stem cell

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