Variant report

Variant	rs4306737
Chromosome Location	chr2:76674337-76674338
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10496204	0.81[ASN][1000 genomes]
rs11126523	0.87[ASN][1000 genomes]
rs17012738	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2178519	1.00[ASN][1000 genomes]
rs2178520	0.82[ASN][1000 genomes]
rs2860769	0.81[ASN][1000 genomes]
rs2860770	0.82[ASN][1000 genomes]
rs2860780	0.90[ASN][1000 genomes]
rs34258481	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34763136	0.94[ASN][1000 genomes]
rs35412086	0.94[ASN][1000 genomes]
rs36005302	0.94[ASN][1000 genomes]
rs62166048	0.81[ASN][1000 genomes]
rs6738224	0.98[ASN][1000 genomes]
rs72809040	0.80[ASN][1000 genomes]
rs72809043	0.80[ASN][1000 genomes]
rs72809046	0.82[ASN][1000 genomes]
rs72809050	0.81[ASN][1000 genomes]
rs7424489	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006097	chr2:76524248-76675427	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2757809	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759064	chr2:76541920-76705354	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv874317	chr2:76554077-76890567	Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1013614	chr2:76624220-76715121	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv582227	chr2:76662404-76712789	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76659200-76677000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:76673800-76674600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:76673800-76674800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:76674000-76674400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:76674000-76674600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:76674000-76674800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:76674200-76674600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr2:76674200-76674800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr2:76674200-76674800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr2:76674200-76674800	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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