Variant report
Variant | rs12475034 |
---|---|
Chromosome Location | chr2:99699464-99699465 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10165534 | 0.82[EUR][1000 genomes] |
rs10179043 | 0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs10181344 | 0.83[CEU][hapmap] |
rs10190421 | 0.94[CEU][hapmap] |
rs10196680 | 0.81[EUR][1000 genomes] |
rs10201856 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs11897712 | 0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs12053372 | 0.87[CEU][hapmap] |
rs12464710 | 0.82[EUR][1000 genomes] |
rs12467679 | 0.82[EUR][1000 genomes] |
rs12468807 | 0.94[CEU][hapmap] |
rs12470471 | 0.83[CEU][hapmap] |
rs12473029 | 0.81[CEU][hapmap] |
rs12474833 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs12477754 | 0.81[EUR][1000 genomes] |
rs13396358 | 0.80[EUR][1000 genomes] |
rs13428547 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1349778 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
rs1349779 | 0.94[CEU][hapmap] |
rs1453561 | 0.94[CEU][hapmap] |
rs1453562 | 0.94[CEU][hapmap] |
rs1580068 | 0.94[CEU][hapmap];0.82[EUR][1000 genomes] |
rs17708218 | 0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs17708262 | 0.83[CEU][hapmap] |
rs17760953 | 0.87[CEU][hapmap];1.00[CHB][hapmap] |
rs1993230 | 0.94[CEU][hapmap];0.88[EUR][1000 genomes] |
rs2045057 | 0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2123686 | 0.83[CEU][hapmap] |
rs2309524 | 0.94[CEU][hapmap];0.86[EUR][1000 genomes] |
rs3851334 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4324365 | 0.94[CEU][hapmap] |
rs4374423 | 0.83[CEU][hapmap] |
rs4622780 | 0.86[CEU][hapmap];0.82[EUR][1000 genomes] |
rs4851183 | 0.83[CEU][hapmap] |
rs4851184 | 0.94[CEU][hapmap] |
rs4851185 | 0.83[CEU][hapmap] |
rs60012524 | 0.86[EUR][1000 genomes] |
rs62153764 | 0.84[ASN][1000 genomes] |
rs62156364 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6542852 | 0.81[EUR][1000 genomes] |
rs6704766 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
rs6735801 | 0.83[CEU][hapmap] |
rs6736064 | 0.84[EUR][1000 genomes] |
rs6737257 | 0.83[CEU][hapmap] |
rs6750876 | 0.83[CEU][hapmap] |
rs6754843 | 0.88[CEU][hapmap] |
rs6756880 | 0.88[CEU][hapmap] |
rs6757019 | 0.94[CEU][hapmap] |
rs6759354 | 0.82[EUR][1000 genomes] |
rs7558239 | 0.82[EUR][1000 genomes] |
rs7571390 | 0.83[CEU][hapmap] |
rs7605734 | 0.83[CEU][hapmap] |
rs7606635 | 0.83[CEU][hapmap] |
rs896886 | 0.94[CEU][hapmap];0.83[EUR][1000 genomes] |
rs9308816 | 0.94[CEU][hapmap];0.82[EUR][1000 genomes] |
rs9710648 | 0.83[CEU][hapmap] |
rs972768 | 0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs9808541 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
rs995617 | 0.87[CEU][hapmap];0.82[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834310 | chr2:99533832-99709999 | Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 11 gene(s) | inside rSNPs | diseases |
2 | nsv1007718 | chr2:99542281-99729107 | Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
3 | nsv431424 | chr2:99652682-100494682 | Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:99699200-99699600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |