Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99694874..99697753-chr2:99797016..99799140,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10165534	0.83[EUR][1000 genomes]
rs10179043	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10196680	0.84[EUR][1000 genomes]
rs10202452	0.82[EUR][1000 genomes]
rs11897712	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12464710	0.83[EUR][1000 genomes]
rs12467679	0.85[EUR][1000 genomes]
rs12474833	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12475034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477754	0.84[EUR][1000 genomes]
rs13396358	0.83[EUR][1000 genomes]
rs13412764	0.81[EUR][1000 genomes]
rs13428547	0.82[ASN][1000 genomes]
rs1349778	0.84[EUR][1000 genomes]
rs1580068	0.83[EUR][1000 genomes]
rs17708218	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1993230	0.90[EUR][1000 genomes]
rs2045057	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2309524	0.87[EUR][1000 genomes]
rs3851334	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4622780	0.84[EUR][1000 genomes]
rs60012524	0.87[EUR][1000 genomes]
rs62153764	0.84[ASN][1000 genomes]
rs6542852	0.83[EUR][1000 genomes]
rs6542858	0.80[EUR][1000 genomes]
rs6704766	0.84[EUR][1000 genomes]
rs6721535	0.82[EUR][1000 genomes]
rs6732579	0.81[EUR][1000 genomes]
rs6736064	0.86[EUR][1000 genomes]
rs6740267	0.82[EUR][1000 genomes]
rs6759354	0.83[EUR][1000 genomes]
rs7558239	0.83[EUR][1000 genomes]
rs896886	0.84[EUR][1000 genomes]
rs9308816	0.83[EUR][1000 genomes]
rs972768	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9808541	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834310	chr2:99533832-99709999	Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
2	nsv1007718	chr2:99542281-99729107	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62156364	LIPT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99694800-99696400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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