The 2.0 version of rSNPBase

Variant report

Variant rs12475627
Chromosome Location chr2:11411904-11411905
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11296200-11412600 Weak transcription Aorta Aorta
2 chr2:11310600-11433000 Weak transcription Pancreas Pancrea
3 chr2:11352800-11424000 Weak transcription HSMMtube muscle
4 chr2:11354600-11423800 Weak transcription Brain Inferior Temporal Lobe brain
5 chr2:11361000-11416600 Weak transcription Primary T regulatory cells fromperipheralblood blood
6 chr2:11361200-11425600 Weak transcription Stomach Smooth Muscle stomach
7 chr2:11364400-11423800 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr2:11372600-11423800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr2:11378800-11428600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr2:11383000-11424000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr2:11387800-11417400 Weak transcription Placenta Placenta
12 chr2:11389800-11423800 Weak transcription Colonic Mucosa Colon
13 chr2:11391400-11412600 Weak transcription Muscle Satellite Cultured Cells --
14 chr2:11391400-11423800 Weak transcription HUES48 Cell Line embryonic stem cell
15 chr2:11391400-11423800 Weak transcription iPS-20b Cell Line embryonic stem cell
16 chr2:11391400-11423800 Weak transcription Ovary ovary
17 chr2:11391600-11414600 Weak transcription HUVEC blood vessel
18 chr2:11391600-11418000 Weak transcription HUES64 Cell Line embryonic stem cell
19 chr2:11391600-11424000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr2:11391600-11424000 Weak transcription NHEK skin
21 chr2:11392400-11423800 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr2:11394600-11417600 Weak transcription Fetal Lung lung
23 chr2:11394800-11420400 Weak transcription Small Intestine intestine
24 chr2:11394800-11423800 Weak transcription Fetal Kidney kidney
25 chr2:11394800-11432800 Weak transcription Right Ventricle heart
26 chr2:11395400-11417400 Weak transcription Brain Germinal Matrix brain
27 chr2:11396400-11413200 Strong transcription HepG2 liver
28 chr2:11396600-11423800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr2:11397600-11412600 Weak transcription Left Ventricle heart
30 chr2:11397600-11412600 Weak transcription Lung lung
31 chr2:11397600-11414800 Weak transcription GM12878-XiMat blood
32 chr2:11397600-11417400 Weak transcription Adipose Nuclei Adipose
33 chr2:11397600-11423200 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr2:11397800-11417600 Weak transcription Liver Liver
35 chr2:11397800-11417800 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr2:11403600-11413600 Weak transcription K562 blood
37 chr2:11404400-11423800 Weak transcription Rectal Smooth Muscle rectum
38 chr2:11404400-11423800 Weak transcription Skeletal Muscle Male skeletal muscle
39 chr2:11404600-11423800 Weak transcription Colon Smooth Muscle Colon
40 chr2:11404800-11423800 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr2:11404800-11423800 Weak transcription Fetal Heart heart
42 chr2:11406200-11423800 Weak transcription Fetal Brain Female brain
43 chr2:11408200-11412800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr2:11408600-11418000 Weak transcription Hela-S3 cervix
45 chr2:11409000-11417400 Weak transcription Primary T helper cells PMA-I stimulated --
46 chr2:11409000-11424000 Weak transcription Fetal Brain Male brain
47 chr2:11409400-11423800 Weak transcription NH-A brain
48 chr2:11409600-11413400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr2:11409800-11423800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
50 chr2:11409800-11424200 Weak transcription HMEC breast

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Last update: Aug 31, 2015