Variant report

Variant	rs12479252
Chromosome Location	chr2:180393585-180393586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12471789	0.85[CHB][hapmap]
rs13006274	0.90[CHB][hapmap]
rs13016735	0.90[CHB][hapmap]
rs16866761	0.81[CHB][hapmap]
rs17285077	0.81[CHB][hapmap]
rs17747516	0.81[CHB][hapmap]
rs2138877	0.81[CHB][hapmap]
rs2271759	0.90[CHB][hapmap]
rs4893875	0.86[CHB][hapmap]
rs4894100	0.90[CHB][hapmap]
rs6718486	0.84[CHB][hapmap]
rs9288034	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180386600-180397600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:180391400-180394800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180391600-180397400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:180392800-180393600	Enhancers	Psoas Muscle	Psoas
5	chr2:180392800-180393800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:180392800-180394200	Enhancers	HepG2	liver
7	chr2:180393000-180394200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:180393400-180393800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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