Variant report

Variant	rs4893875
Chromosome Location	chr2:180351432-180351433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11884249	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11885574	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11901927	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12471789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12479252	0.86[CHB][hapmap]
rs12620539	0.86[CHB][hapmap]
rs13003114	0.90[CHB][hapmap]
rs13006274	0.88[CEU][hapmap];0.87[CHB][hapmap];0.88[EUR][1000 genomes]
rs13016735	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1400819	0.85[CHB][hapmap]
rs1400822	0.83[CEU][hapmap];0.91[CHB][hapmap]
rs16866761	0.95[CHB][hapmap]
rs17285077	0.95[CHB][hapmap]
rs17747516	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17747613	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2138877	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2271759	0.87[CEU][hapmap];0.86[CHB][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4894100	0.87[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs6433794	0.83[CHB][hapmap]
rs6708300	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6715181	0.86[CHB][hapmap]
rs6715297	0.87[CEU][hapmap];0.91[CHB][hapmap]
rs6718486	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7563400	0.97[ASN][1000 genomes]
rs7563476	0.86[CHB][hapmap]
rs9288034	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180332800-180352600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:180348200-180351800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr2:180348600-180352200	Weak transcription	Gastric	stomach
5	chr2:180349600-180353000	Enhancers	Fetal Heart	heart
6	chr2:180350200-180357800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:180350400-180352600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr2:180350400-180355200	Weak transcription	Right Atrium	heart
9	chr2:180350600-180367200	Weak transcription	Liver	Liver
10	chr2:180351400-180351600	Enhancers	Psoas Muscle	Psoas
11	chr2:180351400-180351800	Enhancers	Fetal Brain Male	brain
12	chr2:180351400-180352000	Enhancers	HUVEC	blood vessel
13	chr2:180351400-180352200	Enhancers	Fetal Lung	lung
14	chr2:180351400-180352400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr2:180351400-180352600	Enhancers	Fetal Intestine Large	intestine
16	chr2:180351400-180352600	Enhancers	Rectal Mucosa Donor 29	rectum

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