Variant report

Variant	rs13003114
Chromosome Location	chr2:180377479-180377480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11884249	0.94[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.86[MKK][hapmap];0.96[YRI][hapmap]
rs12465393	0.93[ASN][1000 genomes]
rs12471789	0.81[ASW][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.85[GIH][hapmap];0.81[MKK][hapmap];0.91[YRI][hapmap]
rs12620539	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs13006274	0.86[CHB][hapmap];0.87[YRI][hapmap]
rs13016735	0.84[CHB][hapmap]
rs1400819	0.81[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1400822	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs16866761	0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs17285077	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17747516	0.95[CHB][hapmap];0.91[YRI][hapmap]
rs17815834	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2138877	0.95[CHB][hapmap];0.96[YRI][hapmap];0.80[ASN][1000 genomes]
rs2271759	0.86[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap]
rs4893875	0.90[CHB][hapmap]
rs4894100	0.86[CHB][hapmap];0.82[GIH][hapmap];0.87[YRI][hapmap]
rs6433794	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs6708300	0.81[ASW][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.81[MKK][hapmap];0.80[YRI][hapmap]
rs6715181	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs6715297	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs6718486	0.91[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.87[YRI][hapmap]
rs73973302	0.88[ASN][1000 genomes]
rs7563476	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs9288034	0.95[CHB][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180352800-180378400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180370800-180392800	Weak transcription	Psoas Muscle	Psoas
3	chr2:180375600-180381400	Strong transcription	Liver	Liver
4	chr2:180376000-180378800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:180376200-180378400	Enhancers	Fetal Brain Female	brain
6	chr2:180377200-180378200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:180377200-180378400	Enhancers	Fetal Brain Male	brain
8	chr2:180377200-180378600	Enhancers	Fetal Intestine Large	intestine
9	chr2:180377200-180379000	Enhancers	Fetal Intestine Small	intestine
10	chr2:180377400-180378400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:180377400-180378400	Enhancers	Brain Germinal Matrix	brain

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