Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11884249	0.90[CHB][hapmap];0.83[CHD][hapmap];0.92[YRI][hapmap];0.81[ASN][1000 genomes]
rs12465393	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12471789	0.85[CHB][hapmap];0.83[CHD][hapmap];0.96[YRI][hapmap]
rs12620539	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs13003114	0.81[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs13006274	0.82[CHB][hapmap];0.91[YRI][hapmap]
rs1400822	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs16866761	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17285077	0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs17747516	0.90[CHB][hapmap];0.96[YRI][hapmap]
rs17815834	0.92[ASN][1000 genomes]
rs2138877	0.90[CHB][hapmap];0.92[YRI][hapmap];0.81[ASN][1000 genomes]
rs2271759	0.82[CHB][hapmap]
rs4893875	0.85[CHB][hapmap]
rs4894100	0.82[CHB][hapmap];0.91[YRI][hapmap]
rs6433794	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs6708300	0.90[CHB][hapmap];0.85[CHD][hapmap];0.84[YRI][hapmap]
rs6715181	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs6715297	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs6718486	0.86[CHB][hapmap];0.80[CHD][hapmap];0.91[YRI][hapmap]
rs73973302	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7563400	0.80[ASN][1000 genomes]
rs7563476	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs9288034	0.90[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180352800-180378400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180368000-180375400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180368200-180375600	Weak transcription	Liver	Liver
4	chr2:180370800-180392800	Weak transcription	Psoas Muscle	Psoas

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