Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11884249	0.83[CHB][hapmap]
rs12465393	0.84[ASN][1000 genomes]
rs12471789	0.83[CHB][hapmap]
rs12620539	0.84[CHB][hapmap];0.90[ASN][1000 genomes]
rs13003114	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs13415364	0.92[ASN][1000 genomes]
rs1400819	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs1400822	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs16866761	0.88[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs17285077	0.88[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs17747516	0.83[CHB][hapmap]
rs17815834	0.83[ASN][1000 genomes]
rs2138877	0.83[CHB][hapmap]
rs4893875	0.83[CHB][hapmap]
rs6708300	0.83[CHB][hapmap]
rs6715181	0.84[CHB][hapmap];0.90[ASN][1000 genomes]
rs6715297	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs73973302	0.86[ASN][1000 genomes]
rs7563476	0.84[CHB][hapmap];0.91[ASN][1000 genomes]
rs9288034	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180386600-180397600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:180391400-180394800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180391600-180397400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:180393600-180399400	Weak transcription	Psoas Muscle	Psoas
5	chr2:180393800-180396600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:180394000-180401200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:180394200-180397400	Weak transcription	HepG2	liver

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