Variant report

Variant	rs1400822
Chromosome Location	chr2:180397455-180397456
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180396502..180399490-chr2:180403575..180405915,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11884249	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs12471789	0.82[CEU][hapmap];0.91[CHB][hapmap]
rs12620539	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13003114	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs13006274	0.85[CHB][hapmap]
rs13016735	0.84[CHB][hapmap]
rs13415364	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1400819	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs16866761	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs17285077	0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs17747516	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs2138877	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs2203739	0.82[ASN][1000 genomes]
rs2271759	0.86[CHB][hapmap]
rs4893875	0.83[CEU][hapmap];0.91[CHB][hapmap]
rs4894100	0.86[CHB][hapmap]
rs6433794	0.89[CHB][hapmap];0.92[ASN][1000 genomes]
rs6708300	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs6715181	0.88[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6715297	0.94[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6718486	0.83[CEU][hapmap];0.90[CHB][hapmap]
rs7563476	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9288034	0.95[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1400822	PRKRA	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180386600-180397600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:180393600-180399400	Weak transcription	Psoas Muscle	Psoas
3	chr2:180394000-180401200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:180394800-180399400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180397000-180401000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:180397200-180398200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:180397200-180398400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:180397400-180398200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:180397400-180398800	Enhancers	HepG2	liver

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