Variant report

Variant	rs17815834
Chromosome Location	chr2:180388229-180388230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12465393	0.99[ASN][1000 genomes]
rs13003114	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1400819	0.92[ASN][1000 genomes]
rs16866761	0.93[ASN][1000 genomes]
rs17285077	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6433794	0.83[ASN][1000 genomes]
rs6715297	0.82[ASN][1000 genomes]
rs73973302	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180370800-180392800	Weak transcription	Psoas Muscle	Psoas
2	chr2:180379000-180390400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:180383800-180389800	Weak transcription	Ovary	ovary
4	chr2:180384200-180391400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180386600-180397600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr2:180387200-180389400	Weak transcription	HepG2	liver
7	chr2:180387800-180388400	Enhancers	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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