The 2.0 version of rSNPBase

Variant report

Variant rs12480255
Chromosome Location chr20:16353251-16353252
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16315400-16364400 Weak transcription Rectal Smooth Muscle rectum
2 chr20:16315800-16357600 Weak transcription Right Ventricle heart
3 chr20:16316000-16384400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
4 chr20:16318800-16368200 Weak transcription Primary B cells from cord blood blood
5 chr20:16334000-16377400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr20:16341200-16371600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr20:16342600-16377400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
8 chr20:16343600-16366800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr20:16343600-16384600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr20:16343800-16356800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr20:16344400-16380200 Weak transcription HSMMtube muscle
12 chr20:16344800-16359400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
13 chr20:16344800-16360800 Strong transcription Rectal Mucosa Donor 31 rectum
14 chr20:16344800-16371400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr20:16344800-16377400 Weak transcription Brain Angular Gyrus brain
16 chr20:16345000-16391200 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr20:16345200-16359400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr20:16345400-16377400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr20:16345400-16391000 Weak transcription Brain Germinal Matrix brain
20 chr20:16346200-16359200 Weak transcription Fetal Brain Female brain
21 chr20:16346400-16363200 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr20:16346600-16354600 Weak transcription Aorta Aorta
23 chr20:16346600-16362400 Weak transcription Primary T killer naive cells fromperipheralblood blood
24 chr20:16346600-16393600 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr20:16346800-16359600 Weak transcription Placenta Placenta
26 chr20:16347200-16368200 Weak transcription Primary monocytes fromperipheralblood blood
27 chr20:16347400-16360000 Weak transcription Primary hematopoietic stem cells blood
28 chr20:16347600-16392000 Weak transcription Fetal Kidney kidney
29 chr20:16348400-16383600 Weak transcription Small Intestine intestine
30 chr20:16348800-16356800 Weak transcription HUES48 Cell Line embryonic stem cell
31 chr20:16348800-16359400 Weak transcription Fetal Brain Male brain
32 chr20:16348800-16361800 Weak transcription Thymus Thymus
33 chr20:16349000-16354400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr20:16349000-16359400 Weak transcription Gastric stomach
35 chr20:16349000-16371800 Weak transcription Stomach Mucosa stomach
36 chr20:16349200-16365000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
37 chr20:16349200-16380000 Weak transcription Primary hematopoietic stem cells short term culture blood
38 chr20:16349400-16354400 Weak transcription Fetal Intestine Large intestine
39 chr20:16349400-16354400 Weak transcription Psoas Muscle Psoas
40 chr20:16349400-16354600 Weak transcription Brain Hippocampus Middle brain
41 chr20:16349400-16354600 Weak transcription Fetal Stomach stomach
42 chr20:16349400-16354800 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr20:16349400-16359400 Weak transcription Fetal Lung lung
44 chr20:16349400-16364200 Weak transcription Brain Inferior Temporal Lobe brain
45 chr20:16349600-16359400 Weak transcription Pancreas Pancrea
46 chr20:16349600-16372200 Weak transcription Colonic Mucosa Colon
47 chr20:16349600-16376400 Weak transcription HUES64 Cell Line embryonic stem cell
48 chr20:16349800-16353600 Strong transcription Duodenum Smooth Muscle Duodenum
49 chr20:16349800-16354400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr20:16349800-16356400 Weak transcription Spleen Spleen

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Last update: Aug 31, 2015