Variant report

Variant	rs56918244
Chromosome Location	chr20:16357611-16357612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16352051..16355207-chr20:16355386..16358165,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12479724	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12480255	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13038075	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3746783	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41276372	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6111071	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16315400-16364400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr20:16316000-16384400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr20:16318800-16368200	Weak transcription	Primary B cells from cord blood	blood
4	chr20:16334000-16377400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr20:16341200-16371600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr20:16342600-16377400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr20:16343600-16366800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr20:16343600-16384600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr20:16344400-16380200	Weak transcription	HSMMtube	muscle
10	chr20:16344800-16359400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr20:16344800-16360800	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr20:16344800-16371400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr20:16344800-16377400	Weak transcription	Brain Angular Gyrus	brain
14	chr20:16345000-16391200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr20:16345200-16359400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr20:16345400-16377400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr20:16345400-16391000	Weak transcription	Brain Germinal Matrix	brain
18	chr20:16346200-16359200	Weak transcription	Fetal Brain Female	brain
19	chr20:16346400-16363200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr20:16346600-16362400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr20:16346600-16393600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr20:16346800-16359600	Weak transcription	Placenta	Placenta
23	chr20:16347200-16368200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr20:16347400-16360000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr20:16347600-16392000	Weak transcription	Fetal Kidney	kidney
26	chr20:16348400-16383600	Weak transcription	Small Intestine	intestine
27	chr20:16348800-16359400	Weak transcription	Fetal Brain Male	brain
28	chr20:16348800-16361800	Weak transcription	Thymus	Thymus
29	chr20:16349000-16359400	Weak transcription	Gastric	stomach
30	chr20:16349000-16371800	Weak transcription	Stomach Mucosa	stomach
31	chr20:16349200-16365000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr20:16349200-16380000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr20:16349400-16359400	Weak transcription	Fetal Lung	lung
34	chr20:16349400-16364200	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr20:16349600-16359400	Weak transcription	Pancreas	Pancrea
36	chr20:16349600-16372200	Weak transcription	Colonic Mucosa	Colon
37	chr20:16349600-16376400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr20:16349800-16362800	Weak transcription	Osteobl	bone
39	chr20:16349800-16381600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr20:16350000-16359400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr20:16350000-16360200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr20:16350000-16361800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr20:16350000-16363000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr20:16350000-16366200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr20:16350000-16384000	Weak transcription	HepG2	liver
46	chr20:16350000-16384200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr20:16350200-16368200	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr20:16350600-16362200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr20:16350600-16375000	Weak transcription	Colon Smooth Muscle	Colon
50	chr20:16350800-16360000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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