Variant report

Variant	rs12485537
Chromosome Location	chr3:151071756-151071757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10513391	0.82[EUR][1000 genomes]
rs10935831	0.82[EUR][1000 genomes]
rs10935832	0.82[EUR][1000 genomes]
rs10935833	0.82[EUR][1000 genomes]
rs10935835	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11925037	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11926145	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12107539	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12486265	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12497019	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12637988	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13079391	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13095610	0.80[AMR][1000 genomes]
rs1388617	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16863287	0.82[EUR][1000 genomes]
rs28527299	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34347156	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34708786	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35144003	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35786948	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3732759	0.80[AMR][1000 genomes]
rs3773621	0.85[EUR][1000 genomes]
rs3806636	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4680307	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4680315	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4680356	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55705054	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56087525	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62283022	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66524723	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66927386	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6784934	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6785930	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6796501	0.85[EUR][1000 genomes]
rs6801155	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6808091	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7428575	0.80[AMR][1000 genomes]
rs7648875	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151063800-151099800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:151064400-151089200	Weak transcription	NHLF	lung
3	chr3:151064600-151075200	Weak transcription	Adipose Nuclei	Adipose
4	chr3:151064600-151112400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:151065400-151079600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:151065600-151109400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:151065600-151115200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:151065800-151082200	Weak transcription	Fetal Thymus	thymus
9	chr3:151066000-151074800	Weak transcription	Brain Anterior Caudate	brain
10	chr3:151066400-151075000	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:151066800-151074600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:151067800-151083600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:151068000-151075000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:151068000-151078800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:151068000-151079600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:151068000-151082600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:151068200-151073600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:151068400-151075000	Weak transcription	Aorta	Aorta
19	chr3:151068600-151073800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr3:151069200-151073400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:151069200-151078800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr3:151069200-151078800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr3:151069400-151129800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:151069800-151073600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:151070400-151082800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:151070600-151072400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:151070600-151072600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:151070600-151075000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr3:151070800-151075000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:151071000-151074400	Weak transcription	Primary B cells from cord blood	blood
31	chr3:151071400-151073600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr3:151071400-151073600	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr3:151071400-151073600	Weak transcription	Monocytes-CD14+_RO01746	blood

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