Variant report

Variant	rs3806636
Chromosome Location	chr3:151036514-151036515
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr3:151036064-151036569	SK-N-SH	brain:	n/a	chr3:151036346-151036358
2	PBX3	chr3:151036077-151036530	SK-N-SH	brain:	n/a	n/a
3	JUND	chr3:151035938-151036581	SK-N-SH	brain:	n/a	chr3:151036346-151036358
4	JUND	chr3:151036074-151036517	SK-N-SH	brain:	n/a	chr3:151036346-151036358
5	JUND	chr3:151035944-151036610	SK-N-SH	brain:	n/a	chr3:151036346-151036358
6	GATA3	chr3:151035915-151036526	SK-N-SH	brain:	n/a	n/a
7	PBX3	chr3:151036031-151036561	SK-N-SH	brain:	n/a	n/a
8	TCF12	chr3:151035956-151036595	SK-N-SH	brain:	n/a	n/a
9	GATA3	chr3:151035898-151036662	SK-N-SH	brain:	n/a	n/a
10	RXRA	chr3:151035925-151036611	SK-N-SH	brain:	n/a	chr3:151036226-151036242

Variant related genes	Relation type
GPR87	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10513391	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10935831	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10935832	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10935833	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10935835	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11925037	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11926145	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107539	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12485537	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12486265	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12497019	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12637988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13079391	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1388617	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16863287	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28527299	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34347156	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34708786	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35144003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35786948	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3773621	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4680307	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4680315	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680356	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55705054	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56087525	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62282988	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62283022	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66524723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66927386	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784934	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6785930	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6796501	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6801155	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6808091	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7618206	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7648875	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:151030400-151038400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:151031200-151038200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:151032200-151039200	Enhancers	Hela-S3	cervix
5	chr3:151032800-151036800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:151033000-151036600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:151033000-151038000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:151034000-151037600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:151034600-151039000	Enhancers	NHDF-Ad	bronchial
10	chr3:151034800-151036600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:151034800-151036600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:151034800-151036600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:151034800-151037200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:151034800-151037800	Weak transcription	NH-A	brain
15	chr3:151034800-151038200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:151035000-151039800	Weak transcription	Placenta	Placenta
17	chr3:151035200-151036600	Enhancers	HMEC	breast
18	chr3:151035200-151039600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:151035400-151039000	Enhancers	NHLF	lung
20	chr3:151035600-151037000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr3:151035800-151037000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:151035800-151037000	Enhancers	A549	lung
23	chr3:151035800-151037800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:151035800-151038400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:151035800-151038800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:151036000-151036800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:151036000-151037000	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr3:151036000-151037000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr3:151036000-151037000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr3:151036000-151038600	Enhancers	Osteobl	bone
31	chr3:151036000-151044600	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr3:151036200-151036800	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr3:151036200-151037200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr3:151036200-151039000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:151036200-151043000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr3:151036400-151036600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:151036400-151036800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:151036400-151036800	Flanking Active TSS	NHEK	skin
39	chr3:151036400-151037000	Active TSS	Primary B cells from cord blood	blood
40	chr3:151036400-151037000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:151036400-151037000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr3:151036400-151037200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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