Variant report

Variant	rs12488843
Chromosome Location	chr3:99412183-99412184
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:99410772-99412547	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
ENSG00000263810	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1111615	0.86[ASN][1000 genomes]
rs1610263	0.89[ASN][1000 genomes]
rs1610265	0.81[ASN][1000 genomes]
rs2036984	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4536867	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9821563	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9833844	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9834254	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9836385	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9858145	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99397600-99419200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:99397800-99418000	Weak transcription	NHLF	lung
5	chr3:99403600-99424800	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:99403800-99418200	Weak transcription	Ovary	ovary
7	chr3:99404200-99413400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:99407000-99419200	Weak transcription	Adipose Nuclei	Adipose
9	chr3:99407600-99418800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:99408200-99413000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:99408800-99412800	Strong transcription	Osteobl	bone
12	chr3:99408800-99413400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:99409200-99413000	Strong transcription	HSMM	muscle
14	chr3:99409200-99418800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:99409800-99412200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:99409800-99415200	Strong transcription	HUVEC	blood vessel
17	chr3:99410200-99412800	Weak transcription	NHDF-Ad	bronchial
18	chr3:99410200-99418400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:99410400-99412400	Strong transcription	Aorta	Aorta
20	chr3:99411400-99439600	Weak transcription	NHEK	skin
21	chr3:99411600-99414400	Genic enhancers	Muscle Satellite Cultured Cells	--
22	chr3:99411600-99415000	Weak transcription	NH-A	brain
23	chr3:99411800-99426000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:99412000-99412800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:99412000-99414800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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