Variant report

Variant	rs9834254
Chromosome Location	chr3:99414888-99414889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1111615	0.96[ASN][1000 genomes]
rs12488843	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1610263	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1610265	0.90[ASN][1000 genomes]
rs2036984	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536867	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821563	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9833844	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9836385	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9858145	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99397600-99419200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:99397800-99418000	Weak transcription	NHLF	lung
5	chr3:99403600-99424800	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:99403800-99418200	Weak transcription	Ovary	ovary
7	chr3:99407000-99419200	Weak transcription	Adipose Nuclei	Adipose
8	chr3:99407600-99418800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:99409200-99418800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:99409800-99415200	Strong transcription	HUVEC	blood vessel
11	chr3:99410200-99418400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:99411400-99439600	Weak transcription	NHEK	skin
13	chr3:99411600-99415000	Weak transcription	NH-A	brain
14	chr3:99411800-99426000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:99412400-99415200	Weak transcription	Aorta	Aorta
16	chr3:99413000-99415200	Weak transcription	HSMM	muscle
17	chr3:99413000-99423400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:99413200-99415200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:99413600-99422800	Weak transcription	HMEC	breast
20	chr3:99413800-99417600	Weak transcription	NHDF-Ad	bronchial
21	chr3:99413800-99418400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:99413800-99423800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:99414200-99417400	Strong transcription	Osteobl	bone
24	chr3:99414400-99418600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:99414800-99415200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:99414800-99415400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:99414800-99415600	Strong transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links