Variant report
Variant | rs12488878 |
---|---|
Chromosome Location | chr3:160920209-160920210 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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(count:3 , 50 per page) page:
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Variant related genes | Relation type |
---|---|
ENSG00000169251 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs13318781 | 0.83[CHB][hapmap];0.85[JPT][hapmap] |
rs1450519 | 0.94[CHB][hapmap] |
rs4465984 | 0.84[JPT][hapmap] |
rs4490410 | 0.83[CHB][hapmap];0.83[JPT][hapmap] |
rs6799805 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs731363 | 0.83[CHB][hapmap] |
rs73160351 | 0.87[ASN][1000 genomes] |
rs7622060 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7649959 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9290072 | 0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
rs9825118 | 0.84[CHB][hapmap];0.84[JPT][hapmap] |
rs9831725 | 0.81[ASN][1000 genomes] |
rs9852919 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9857946 | 0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv931072 | chr3:160669567-161159779 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 98 gene(s) | inside rSNPs | diseases |
2 | nsv1015063 | chr3:160918307-161024070 | Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:160915000-160927000 | Weak transcription | Aorta | Aorta |