Variant report

Variant	rs9857946
Chromosome Location	chr3:160918495-160918496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160914723..160916863-chr3:160917581..160919437,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs12488037	0.90[ASN][1000 genomes]
rs12488318	0.85[ASN][1000 genomes]
rs12488878	0.83[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs12494261	0.86[ASN][1000 genomes]
rs12494844	0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs13314089	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13318781	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs13319969	0.91[CHD][hapmap];0.84[JPT][hapmap]
rs13320863	0.84[ASN][1000 genomes]
rs1471440	0.94[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs1478567	0.86[ASN][1000 genomes]
rs1599391	0.80[ASN][1000 genomes]
rs163138	0.89[CEU][hapmap];0.93[CHB][hapmap]
rs1947686	0.84[JPT][hapmap]
rs1970834	0.91[ASN][1000 genomes]
rs2231252	0.91[CHD][hapmap]
rs336544	0.94[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs336545	0.94[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs336546	0.94[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs336564	1.00[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.81[AFR][1000 genomes]
rs336565	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs336566	0.94[CHB][hapmap]
rs336574	0.89[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap]
rs336576	0.89[CEU][hapmap];0.94[CHB][hapmap]
rs336587	0.89[CEU][hapmap];0.93[CHB][hapmap]
rs336588	0.88[CEU][hapmap];0.94[CHB][hapmap]
rs336592	0.89[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap]
rs4270539	0.92[ASN][1000 genomes]
rs4429651	0.91[ASN][1000 genomes]
rs4465984	0.81[CHB][hapmap];0.92[JPT][hapmap]
rs4487256	0.94[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs4490410	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs57201455	0.80[ASN][1000 genomes]
rs62278031	0.85[ASN][1000 genomes]
rs62278055	0.92[ASN][1000 genomes]
rs62279860	0.91[ASN][1000 genomes]
rs62279861	0.91[ASN][1000 genomes]
rs62279862	0.89[ASN][1000 genomes]
rs6795977	0.85[CHD][hapmap]
rs6799805	0.83[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs731363	1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs73160351	1.00[ASN][1000 genomes]
rs73160362	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73162530	0.80[ASN][1000 genomes]
rs7622060	0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs7649959	0.87[ASN][1000 genomes]
rs9290067	0.80[ASN][1000 genomes]
rs9290068	0.80[ASN][1000 genomes]
rs9290072	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9290075	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs978933	0.94[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs9811833	0.94[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs9812083	0.94[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs9817747	0.80[ASN][1000 genomes]
rs9818516	0.87[ASN][1000 genomes]
rs9824308	0.85[CHD][hapmap]
rs9824501	0.80[ASN][1000 genomes]
rs9825118	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs9827833	0.94[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs9828189	1.00[ASW][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap];0.86[ASN][1000 genomes]
rs9828231	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs9831725	0.94[ASN][1000 genomes]
rs9836094	0.91[ASN][1000 genomes]
rs9839404	0.94[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs9842281	0.92[ASN][1000 genomes]
rs9846316	0.81[CHB][hapmap]
rs9852919	0.86[ASN][1000 genomes]
rs9858399	0.92[ASN][1000 genomes]
rs9859045	0.86[ASN][1000 genomes]
rs9876553	1.00[ASW][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.81[MEX][hapmap];0.89[ASN][1000 genomes]
rs9878365	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1015063	chr3:160918307-161024070	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160915000-160927000	Weak transcription	Aorta	Aorta
2	chr3:160918200-160918600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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