Variant report

Variant	rs9817747
Chromosome Location	chr3:160835090-160835091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12488037	0.85[ASN][1000 genomes]
rs12494844	0.86[ASN][1000 genomes]
rs13314089	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13318781	0.86[ASN][1000 genomes]
rs13319969	0.92[ASN][1000 genomes]
rs13320863	0.96[ASN][1000 genomes]
rs1599380	0.88[ASN][1000 genomes]
rs1599384	0.85[ASN][1000 genomes]
rs1599391	1.00[ASN][1000 genomes]
rs1947685	0.94[ASN][1000 genomes]
rs1947686	0.87[ASN][1000 genomes]
rs1970834	0.85[ASN][1000 genomes]
rs2231252	0.87[ASN][1000 genomes]
rs28444697	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35152606	0.94[ASN][1000 genomes]
rs35440670	0.87[ASN][1000 genomes]
rs35446590	0.94[ASN][1000 genomes]
rs35599916	0.86[ASN][1000 genomes]
rs36105583	0.94[ASN][1000 genomes]
rs4270539	0.86[ASN][1000 genomes]
rs4443220	0.87[ASN][1000 genomes]
rs4465984	0.88[ASN][1000 genomes]
rs4490410	0.86[ASN][1000 genomes]
rs56990390	0.84[AMR][1000 genomes]
rs62278031	0.90[ASN][1000 genomes]
rs6441353	0.87[ASN][1000 genomes]
rs6795977	0.86[ASN][1000 genomes]
rs68159406	0.87[ASN][1000 genomes]
rs731363	1.00[ASN][1000 genomes]
rs73158252	0.82[AMR][1000 genomes]
rs73158257	0.84[AMR][1000 genomes]
rs73160351	0.80[ASN][1000 genomes]
rs7630896	0.87[ASN][1000 genomes]
rs7634115	0.93[ASN][1000 genomes]
rs9290067	1.00[ASN][1000 genomes]
rs9290068	1.00[ASN][1000 genomes]
rs9290072	0.80[ASN][1000 genomes]
rs9810737	0.99[ASN][1000 genomes]
rs9818516	0.93[ASN][1000 genomes]
rs9824308	0.88[ASN][1000 genomes]
rs9824501	1.00[ASN][1000 genomes]
rs9825118	0.86[ASN][1000 genomes]
rs9828205	0.92[ASN][1000 genomes]
rs9831725	0.81[ASN][1000 genomes]
rs9834751	0.88[ASN][1000 genomes]
rs9840389	0.85[ASN][1000 genomes]
rs9842281	0.86[ASN][1000 genomes]
rs9851292	0.82[ASN][1000 genomes]
rs9857946	0.80[ASN][1000 genomes]
rs9858399	0.86[ASN][1000 genomes]
rs9862258	0.99[ASN][1000 genomes]
rs9878365	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv877704	chr3:160806859-160836006	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877705	chr3:160818188-160836006	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877707	chr3:160820175-160836006	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160835000-160836200	Enhancers	HUVEC	blood vessel

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