Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160739507..160741947-chr3:160747617..160749551,2	MCF-7	breast:
2	chr3:160739787..160741430-chr3:160758858..160761533,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12498008	0.83[ASN][1000 genomes]
rs13079358	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13314089	0.82[AMR][1000 genomes]
rs1599382	0.83[ASN][1000 genomes]
rs16831756	0.83[ASN][1000 genomes]
rs16831757	0.81[ASN][1000 genomes]
rs1903422	0.83[ASN][1000 genomes]
rs1971240	0.83[ASN][1000 genomes]
rs2061580	0.83[ASN][1000 genomes]
rs28444697	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56990390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62282273	0.83[ASN][1000 genomes]
rs73158252	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158255	0.83[ASN][1000 genomes]
rs7617759	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs898676	0.81[ASN][1000 genomes]
rs898678	0.81[ASN][1000 genomes]
rs898679	0.80[ASN][1000 genomes]
rs9817747	0.84[AMR][1000 genomes]
rs9818081	0.80[ASN][1000 genomes]
rs9850546	0.81[ASN][1000 genomes]
rs9879296	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160732800-160745000	Weak transcription	Psoas Muscle	Psoas
2	chr3:160733600-160746000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:160740800-160742000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr3:160740800-160745600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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