Variant report

Variant	rs9850546
Chromosome Location	chr3:160746519-160746520
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160745725..160748261-chr3:160752866..160755134,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11709802	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12496196	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12498008	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13325518	0.92[ASN][1000 genomes]
rs1374786	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1530635	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1562466	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1599382	0.98[ASN][1000 genomes]
rs16831756	0.98[ASN][1000 genomes]
rs16831757	0.96[ASN][1000 genomes]
rs16831758	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1868104	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1903422	0.98[ASN][1000 genomes]
rs1971240	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2028988	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2061580	0.98[ASN][1000 genomes]
rs4608736	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4679927	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56990390	0.81[ASN][1000 genomes]
rs57009978	0.98[ASN][1000 genomes]
rs58189630	0.89[ASN][1000 genomes]
rs59483687	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60875417	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62282273	0.98[ASN][1000 genomes]
rs6787694	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6797498	0.82[EUR][1000 genomes]
rs6798966	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6800013	0.80[AMR][1000 genomes]
rs73158252	0.81[ASN][1000 genomes]
rs73158255	0.98[ASN][1000 genomes]
rs73158257	0.81[ASN][1000 genomes]
rs7610732	0.83[EUR][1000 genomes]
rs7619552	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7629001	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7653744	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778644	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778647	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778650	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778651	0.88[ASN][1000 genomes]
rs778652	0.88[ASN][1000 genomes]
rs778655	0.88[ASN][1000 genomes]
rs778656	0.88[ASN][1000 genomes]
rs778658	0.86[ASN][1000 genomes]
rs778661	0.86[ASN][1000 genomes]
rs778662	0.88[ASN][1000 genomes]
rs796610	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs814092	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs878954	0.80[EUR][1000 genomes]
rs898676	1.00[ASN][1000 genomes]
rs898678	1.00[ASN][1000 genomes]
rs898679	0.96[ASN][1000 genomes]
rs9818081	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9879296	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745000-160746600	Enhancers	Psoas Muscle	Psoas
2	chr3:160745200-160748800	Weak transcription	Placenta	Placenta
3	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:160745600-160747600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:160745800-160746800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:160746000-160746800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:160746000-160746800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:160746200-160746600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr3:160746200-160746800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:160746200-160746800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:160746400-160747800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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