Variant report

Variant	rs6800013
Chromosome Location	chr3:160673531-160673532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160672592..160674450-chr3:160676774..160679547,2	MCF-7	breast:
2	chr3:160671990..160674441-chr3:161088428..161090961,2	MCF-7	breast:
3	chr3:160666317..160670196-chr3:160671077..160673874,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10513558	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11709802	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12635022	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13079792	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13086445	0.90[EUR][1000 genomes]
rs1374786	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1530635	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1562466	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1839020	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1868104	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2028988	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4608736	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4679667	0.89[EUR][1000 genomes]
rs4679925	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4679927	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6441342	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6441343	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6441344	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6787694	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6789195	0.81[EUR][1000 genomes]
rs6797498	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6798966	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7610732	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7619552	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7629001	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7653744	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778644	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778647	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778650	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs796610	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs814092	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs878954	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs878955	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs935500	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9850546	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160667400-160696000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:160670200-160686600	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:160670400-160686400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:160670400-160700400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:160670600-160682200	Weak transcription	Left Ventricle	heart
6	chr3:160672400-160674200	Weak transcription	Fetal Brain Female	brain

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