Variant report

Variant	rs13079792
Chromosome Location	chr3:160666767-160666768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160659734..160663014-chr3:160666194..160669867,3	K562	blood:
2	chr3:160666317..160670196-chr3:160671077..160673874,3	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10513558	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11709802	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12635022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086445	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1348977	0.84[EUR][1000 genomes]
rs1374786	0.89[EUR][1000 genomes]
rs1447616	0.84[EUR][1000 genomes]
rs1447617	0.84[EUR][1000 genomes]
rs1530635	0.89[EUR][1000 genomes]
rs1562466	0.89[EUR][1000 genomes]
rs1839020	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1868104	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2028988	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4608736	0.86[EUR][1000 genomes]
rs4679667	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4679925	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4679927	0.89[EUR][1000 genomes]
rs6441333	0.83[EUR][1000 genomes]
rs6441334	0.84[EUR][1000 genomes]
rs6441336	0.84[EUR][1000 genomes]
rs6441342	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6441343	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6441344	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6785844	0.84[EUR][1000 genomes]
rs6787694	0.89[EUR][1000 genomes]
rs6789195	0.85[EUR][1000 genomes]
rs6796612	0.83[AMR][1000 genomes]
rs6797498	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6798966	0.81[EUR][1000 genomes]
rs6799391	0.84[EUR][1000 genomes]
rs6800013	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7610732	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7619552	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7626904	0.85[ASN][1000 genomes]
rs7626985	0.85[ASN][1000 genomes]
rs7629001	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7636886	0.84[EUR][1000 genomes]
rs7640874	0.85[ASN][1000 genomes]
rs7653744	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs778644	0.89[EUR][1000 genomes]
rs778647	0.89[EUR][1000 genomes]
rs778650	0.89[EUR][1000 genomes]
rs796610	0.89[EUR][1000 genomes]
rs814092	0.89[EUR][1000 genomes]
rs878954	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs878955	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs935500	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9814174	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160658800-160667400	Weak transcription	Thymus	Thymus
2	chr3:160665800-160666800	Enhancers	Liver	Liver
3	chr3:160666000-160667400	Enhancers	Fetal Kidney	kidney
4	chr3:160666000-160668000	Enhancers	HepG2	liver
5	chr3:160666200-160667000	Enhancers	Psoas Muscle	Psoas
6	chr3:160666200-160667400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:160666200-160669000	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr3:160666400-160668200	Weak transcription	Gastric	stomach
9	chr3:160666400-160669400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr3:160666400-160669600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:160666400-160669600	Weak transcription	Left Ventricle	heart
12	chr3:160666400-160673400	Weak transcription	Right Atrium	heart
13	chr3:160666600-160667400	Weak transcription	Pancreas	Pancrea
14	chr3:160666600-160668200	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links