Variant report

Variant	rs7653744
Chromosome Location	chr3:160676754-160676755
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10513558	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11709802	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496196	0.82[AMR][1000 genomes]
rs12498008	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12635022	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13079792	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13086445	0.92[EUR][1000 genomes]
rs1348977	0.82[EUR][1000 genomes]
rs1374786	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1447608	0.88[ASN][1000 genomes]
rs1447616	0.82[EUR][1000 genomes]
rs1447617	0.82[EUR][1000 genomes]
rs1530635	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1562466	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16831758	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1839020	0.92[EUR][1000 genomes]
rs1868104	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1971240	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2028988	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121721	0.86[ASN][1000 genomes]
rs4608736	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4679667	0.91[EUR][1000 genomes]
rs4679925	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4679927	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60875417	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6441333	0.81[EUR][1000 genomes]
rs6441334	0.82[EUR][1000 genomes]
rs6441336	0.82[EUR][1000 genomes]
rs6441342	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6441343	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6441344	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6785844	0.82[EUR][1000 genomes]
rs6787694	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6789195	0.83[EUR][1000 genomes]
rs6797498	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6798966	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6799391	0.82[EUR][1000 genomes]
rs6800013	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6808386	0.84[ASN][1000 genomes]
rs7610732	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7613316	0.85[ASN][1000 genomes]
rs7616249	0.87[ASN][1000 genomes]
rs7617759	0.81[ASN][1000 genomes]
rs7619552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7635796	0.85[ASN][1000 genomes]
rs7636886	0.82[EUR][1000 genomes]
rs7644586	0.85[ASN][1000 genomes]
rs778644	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778647	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778650	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs796610	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs814092	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs878954	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs878955	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs935500	0.92[EUR][1000 genomes]
rs9813700	0.88[ASN][1000 genomes]
rs9818081	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9850546	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9857743	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160667400-160696000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:160670200-160686600	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:160670400-160686400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:160670400-160700400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:160670600-160682200	Weak transcription	Left Ventricle	heart

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