Variant report

Variant	rs7613316
Chromosome Location	chr3:160674533-160674534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10513558	0.93[JPT][hapmap];0.82[YRI][hapmap]
rs10513560	1.00[CEU][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes]
rs10936216	0.93[EUR][1000 genomes]
rs11709802	0.83[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs12494673	0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap]
rs12690576	0.83[CEU][hapmap]
rs13086445	0.90[YRI][hapmap]
rs1374787	0.83[CEU][hapmap]
rs1447608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1447609	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1447624	0.87[JPT][hapmap]
rs1530636	1.00[CEU][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes]
rs1562465	1.00[CEU][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs1580253	0.85[EUR][1000 genomes]
rs1868104	0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1868108	0.83[CEU][hapmap]
rs1868109	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs2028988	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs2121721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2376477	0.80[EUR][1000 genomes]
rs2889391	0.93[EUR][1000 genomes]
rs34462546	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4679667	0.80[JPT][hapmap]
rs6441344	0.82[YRI][hapmap]
rs6441345	0.80[JPT][hapmap];0.93[EUR][1000 genomes]
rs6441346	0.93[EUR][1000 genomes]
rs6763532	0.93[EUR][1000 genomes]
rs6770180	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6770488	0.80[JPT][hapmap]
rs6774203	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6797498	0.84[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs6808386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs733948	0.83[CEU][hapmap]
rs7610732	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs7616249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7619552	0.85[ASN][1000 genomes]
rs7626904	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7626985	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7629001	0.84[ASN][1000 genomes]
rs7635796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7640874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7644586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653744	0.85[ASN][1000 genomes]
rs778651	0.81[JPT][hapmap]
rs898682	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs956447	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs9813700	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9840600	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9846254	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs9857743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9860182	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs9881807	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7613316	B3GALNT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160667400-160696000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:160670200-160686600	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:160670400-160686400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:160670400-160700400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:160670600-160682200	Weak transcription	Left Ventricle	heart
6	chr3:160674400-160674600	Enhancers	Fetal Brain Female	brain

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