Variant report

Variant	rs12494673
Chromosome Location	chr3:160666119-160666120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10513558	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11709802	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs12498008	0.80[JPT][hapmap]
rs12635022	0.85[ASN][1000 genomes]
rs12696110	0.86[JPT][hapmap]
rs13079792	0.85[ASN][1000 genomes]
rs13086445	0.93[YRI][hapmap]
rs1447608	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs1447624	0.93[JPT][hapmap]
rs1599382	0.80[JPT][hapmap]
rs16831758	0.80[JPT][hapmap]
rs1868104	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs1868106	0.86[JPT][hapmap]
rs1971240	0.80[JPT][hapmap]
rs2028988	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs2121721	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4679667	0.86[JPT][hapmap]
rs4679925	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6441343	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6441344	1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs6770488	0.86[JPT][hapmap]
rs6774203	0.81[JPT][hapmap];0.83[YRI][hapmap]
rs6797498	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs6808386	0.92[CHB][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs7610732	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs7613316	0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs7616249	0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.80[ASN][1000 genomes]
rs7626904	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7626985	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7635796	0.85[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.81[ASN][1000 genomes]
rs7640874	0.85[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs7644586	0.85[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs778647	0.80[JPT][hapmap]
rs778651	0.87[JPT][hapmap]
rs778652	0.80[JPT][hapmap]
rs778655	0.86[JPT][hapmap]
rs878954	0.84[ASN][1000 genomes]
rs878955	0.84[ASN][1000 genomes]
rs898676	0.80[JPT][hapmap]
rs9857743	0.82[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	esv2254456	chr3:160666117-160666119	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160658800-160667400	Weak transcription	Thymus	Thymus
2	chr3:160663400-160666200	Weak transcription	Psoas Muscle	Psoas
3	chr3:160665800-160666600	Enhancers	Fetal Intestine Large	intestine
4	chr3:160665800-160666800	Enhancers	Liver	Liver
5	chr3:160666000-160666200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:160666000-160666200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:160666000-160666400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:160666000-160666600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:160666000-160667400	Enhancers	Fetal Kidney	kidney
10	chr3:160666000-160668000	Enhancers	HepG2	liver

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