Variant report

Variant	rs4679925
Chromosome Location	chr3:160670377-160670378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160670258..160673183-chr3:161089074..161090701,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10513558	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11709802	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12635022	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13079792	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13086445	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1348977	0.84[EUR][1000 genomes]
rs1374786	0.89[EUR][1000 genomes]
rs1447616	0.84[EUR][1000 genomes]
rs1447617	0.84[EUR][1000 genomes]
rs1530635	0.89[EUR][1000 genomes]
rs1562466	0.89[EUR][1000 genomes]
rs1839020	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1868104	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2028988	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4608736	0.86[EUR][1000 genomes]
rs4679667	0.94[EUR][1000 genomes]
rs4679927	0.89[EUR][1000 genomes]
rs6441333	0.83[EUR][1000 genomes]
rs6441334	0.84[EUR][1000 genomes]
rs6441336	0.84[EUR][1000 genomes]
rs6441342	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6441343	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785844	0.84[EUR][1000 genomes]
rs6787694	0.89[EUR][1000 genomes]
rs6789195	0.85[EUR][1000 genomes]
rs6796612	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6797498	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6798966	0.81[EUR][1000 genomes]
rs6799391	0.84[EUR][1000 genomes]
rs6800013	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7610732	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7619552	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7626904	0.86[ASN][1000 genomes]
rs7626985	0.86[ASN][1000 genomes]
rs7629001	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7636886	0.84[EUR][1000 genomes]
rs7640874	0.86[ASN][1000 genomes]
rs7653744	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778644	0.89[EUR][1000 genomes]
rs778647	0.89[EUR][1000 genomes]
rs778650	0.89[EUR][1000 genomes]
rs796610	0.89[EUR][1000 genomes]
rs814092	0.89[EUR][1000 genomes]
rs878954	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs878955	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs935500	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9814174	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160666400-160673400	Weak transcription	Right Atrium	heart
2	chr3:160667400-160696000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:160668200-160670400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr3:160669000-160670600	Enhancers	Fetal Brain Male	brain
5	chr3:160669000-160672400	Enhancers	Fetal Brain Female	brain
6	chr3:160669200-160670800	Enhancers	Fetal Kidney	kidney
7	chr3:160669600-160670400	Enhancers	Fetal Heart	heart
8	chr3:160669600-160670600	Enhancers	Left Ventricle	heart
9	chr3:160669600-160671000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr3:160669800-160670400	Enhancers	Psoas Muscle	Psoas
11	chr3:160669800-160671200	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr3:160670200-160670400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:160670200-160686600	Weak transcription	Fetal Muscle Leg	muscle

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