Variant report

Variant	rs1374786
Chromosome Location	chr3:160700496-160700497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10513558	0.89[EUR][1000 genomes]
rs10513560	0.89[ASN][1000 genomes]
rs10936216	0.89[ASN][1000 genomes]
rs11709802	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12496196	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12498008	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12635022	0.89[EUR][1000 genomes]
rs13079792	0.89[EUR][1000 genomes]
rs13086445	0.86[EUR][1000 genomes]
rs13325518	0.81[ASN][1000 genomes]
rs1447609	0.88[ASN][1000 genomes]
rs1530635	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530636	0.89[ASN][1000 genomes]
rs1562465	0.89[ASN][1000 genomes]
rs1562466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1599382	0.90[ASN][1000 genomes]
rs16831756	0.90[ASN][1000 genomes]
rs16831757	0.90[ASN][1000 genomes]
rs16831758	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1839020	0.86[EUR][1000 genomes]
rs1868104	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1903422	0.90[ASN][1000 genomes]
rs1971240	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2028988	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2061580	0.90[ASN][1000 genomes]
rs2889391	0.89[ASN][1000 genomes]
rs34462546	0.88[ASN][1000 genomes]
rs4608736	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4679667	0.85[EUR][1000 genomes]
rs4679925	0.89[EUR][1000 genomes]
rs4679927	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57009978	0.87[ASN][1000 genomes]
rs58189630	0.99[ASN][1000 genomes]
rs59483687	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60875417	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62282273	0.90[ASN][1000 genomes]
rs6441342	0.86[EUR][1000 genomes]
rs6441343	0.89[EUR][1000 genomes]
rs6441344	0.89[EUR][1000 genomes]
rs6441345	0.89[ASN][1000 genomes]
rs6441346	0.89[ASN][1000 genomes]
rs6763532	0.89[ASN][1000 genomes]
rs6770180	0.89[ASN][1000 genomes]
rs6774203	0.88[ASN][1000 genomes]
rs6787694	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6797498	0.91[EUR][1000 genomes]
rs6798966	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6800013	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73158255	0.90[ASN][1000 genomes]
rs7610732	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7619552	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7629001	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7653744	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778644	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778650	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778651	1.00[ASN][1000 genomes]
rs778652	1.00[ASN][1000 genomes]
rs778655	1.00[ASN][1000 genomes]
rs778656	1.00[ASN][1000 genomes]
rs778658	0.97[ASN][1000 genomes]
rs778661	0.97[ASN][1000 genomes]
rs778662	1.00[ASN][1000 genomes]
rs796610	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs814092	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs878954	0.90[EUR][1000 genomes]
rs878955	0.89[EUR][1000 genomes]
rs898676	0.88[ASN][1000 genomes]
rs898678	0.88[ASN][1000 genomes]
rs898679	0.87[ASN][1000 genomes]
rs935500	0.86[EUR][1000 genomes]
rs9818081	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9850546	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9879296	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv1007004	chr3:160695108-160718154	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160695200-160701400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr3:160696200-160700600	Enhancers	Dnd41	blood
3	chr3:160697000-160704000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:160697200-160710600	Weak transcription	Left Ventricle	heart
5	chr3:160697800-160701400	Enhancers	Primary hematopoietic stem cells	blood
6	chr3:160698200-160700800	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:160698200-160700800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:160698200-160701000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:160699200-160701200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr3:160699200-160701600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:160699400-160700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:160699800-160701200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:160699800-160701200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr3:160700000-160702000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:160700200-160701000	Weak transcription	Adipose Nuclei	Adipose
16	chr3:160700200-160701400	Weak transcription	Placenta	Placenta
17	chr3:160700400-160701200	Enhancers	Primary B cells from cord blood	blood

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