Variant report

Variant	rs58189630
Chromosome Location	chr3:160725905-160725906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10513560	0.88[ASN][1000 genomes]
rs10936216	0.88[ASN][1000 genomes]
rs12498008	0.91[ASN][1000 genomes]
rs13325518	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1374786	0.99[ASN][1000 genomes]
rs1447609	0.87[ASN][1000 genomes]
rs1530635	0.99[ASN][1000 genomes]
rs1530636	0.88[ASN][1000 genomes]
rs1562465	0.88[ASN][1000 genomes]
rs1562466	0.99[ASN][1000 genomes]
rs1599382	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16831756	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16831757	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16831758	0.88[ASN][1000 genomes]
rs1903422	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1971240	0.91[ASN][1000 genomes]
rs2061580	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2889391	0.88[ASN][1000 genomes]
rs34462546	0.87[ASN][1000 genomes]
rs4608736	0.99[ASN][1000 genomes]
rs4679927	0.99[ASN][1000 genomes]
rs57009978	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59483687	0.82[ASN][1000 genomes]
rs60875417	0.88[ASN][1000 genomes]
rs62282273	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441345	0.88[ASN][1000 genomes]
rs6441346	0.88[ASN][1000 genomes]
rs6763532	0.88[ASN][1000 genomes]
rs6770180	0.88[ASN][1000 genomes]
rs6774203	0.87[ASN][1000 genomes]
rs6787694	0.99[ASN][1000 genomes]
rs6798966	0.96[ASN][1000 genomes]
rs73158255	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778644	0.99[ASN][1000 genomes]
rs778647	0.99[ASN][1000 genomes]
rs778650	0.99[ASN][1000 genomes]
rs778651	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778652	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778655	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778658	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs778661	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs778662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs796610	0.99[ASN][1000 genomes]
rs814092	0.99[ASN][1000 genomes]
rs898676	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs898678	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs898679	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9818081	0.87[ASN][1000 genomes]
rs9850546	0.89[ASN][1000 genomes]
rs9879296	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160724800-160726400	Enhancers	Placenta	Placenta
2	chr3:160725000-160726400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:160725600-160726000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:160725800-160726400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:160725800-160726400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:160725800-160726400	Enhancers	Placenta Amnion	Placenta Amnion

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