Variant report

Variant	rs60875417
Chromosome Location	chr3:160743731-160743732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11709802	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12496196	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12498008	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13325518	0.90[ASN][1000 genomes]
rs1374786	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1530635	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1562466	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1599382	0.96[ASN][1000 genomes]
rs16831756	0.96[ASN][1000 genomes]
rs16831757	0.95[ASN][1000 genomes]
rs16831758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868104	0.83[EUR][1000 genomes]
rs1903422	0.96[ASN][1000 genomes]
rs1971240	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2028988	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2061580	0.96[ASN][1000 genomes]
rs4608736	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4679927	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57009978	1.00[ASN][1000 genomes]
rs58189630	0.88[ASN][1000 genomes]
rs59483687	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62282273	0.96[ASN][1000 genomes]
rs6787694	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6797498	0.82[EUR][1000 genomes]
rs6798966	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73158255	0.96[ASN][1000 genomes]
rs7610732	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7619552	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7629001	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7653744	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778644	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs778647	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs778650	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs778651	0.87[ASN][1000 genomes]
rs778652	0.87[ASN][1000 genomes]
rs778655	0.87[ASN][1000 genomes]
rs778656	0.87[ASN][1000 genomes]
rs778658	0.84[ASN][1000 genomes]
rs778661	0.84[ASN][1000 genomes]
rs778662	0.87[ASN][1000 genomes]
rs796610	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs814092	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs878954	0.80[EUR][1000 genomes]
rs898676	0.98[ASN][1000 genomes]
rs898678	0.98[ASN][1000 genomes]
rs898679	0.95[ASN][1000 genomes]
rs9818081	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9850546	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9879296	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv3414528	chr3:160743592-160743760	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160732800-160745000	Weak transcription	Psoas Muscle	Psoas
2	chr3:160733600-160746000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:160740800-160745600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:160742000-160743800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr3:160742200-160746000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:160742600-160744200	Enhancers	Primary neutrophils fromperipheralblood	blood

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