Variant report

Variant	rs12496196
Chromosome Location	chr3:160768149-160768150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10513558	0.92[CEU][hapmap]
rs10513560	0.81[JPT][hapmap]
rs11709802	0.92[CEU][hapmap];0.89[AMR][1000 genomes]
rs12498008	0.92[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13079358	0.82[CEU][hapmap]
rs13325518	0.86[JPT][hapmap]
rs1348977	1.00[CEU][hapmap]
rs1374786	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1447617	0.92[CEU][hapmap]
rs1530635	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1530636	0.81[JPT][hapmap]
rs1562465	0.81[JPT][hapmap]
rs1562466	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1580253	0.88[ASN][1000 genomes]
rs1580254	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1599382	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs16831758	0.92[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1868104	1.00[CEU][hapmap]
rs1971240	0.92[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2028988	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs2061580	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs34884182	0.81[ASN][1000 genomes]
rs4608736	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4679667	0.92[CEU][hapmap]
rs4679927	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59483687	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60875417	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6441334	0.92[CEU][hapmap]
rs6441336	0.92[CEU][hapmap]
rs6441344	0.89[CEU][hapmap]
rs6441345	0.81[JPT][hapmap]
rs6763532	0.86[JPT][hapmap]
rs6785844	0.92[CEU][hapmap]
rs6787694	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6789195	1.00[CEU][hapmap]
rs6798966	0.89[AMR][1000 genomes]
rs6799391	0.92[CEU][hapmap]
rs7610732	0.92[CEU][hapmap]
rs7617759	0.91[CEU][hapmap]
rs7619552	0.82[AMR][1000 genomes]
rs7629001	0.82[AMR][1000 genomes]
rs7653744	0.82[AMR][1000 genomes]
rs778644	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778647	0.92[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs778650	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778651	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs778652	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs778655	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs796610	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs814092	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs898676	0.94[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs898678	0.81[ASN][1000 genomes]
rs898679	0.80[ASN][1000 genomes]
rs898682	0.83[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs9814174	0.92[CEU][hapmap]
rs9818081	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9839984	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs9840600	0.83[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs9846254	0.82[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs9850546	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9858335	0.86[JPT][hapmap]
rs9860182	0.82[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs9873705	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:160768000-160778000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:160768000-160786400	Weak transcription	Left Ventricle	heart

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