Variant report

Variant	rs9814174
Chromosome Location	chr3:160588505-160588506
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160587600..160589495-chr3:161088974..161091016,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10513558	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11709802	1.00[CEU][hapmap]
rs12485723	0.85[ASN][1000 genomes]
rs12496196	0.92[CEU][hapmap]
rs12498008	1.00[CEU][hapmap]
rs12635022	0.82[EUR][1000 genomes]
rs13079358	0.90[CEU][hapmap]
rs13079792	0.82[EUR][1000 genomes]
rs13086445	0.85[EUR][1000 genomes]
rs1348977	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1447616	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1447617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1447624	0.83[ASN][1000 genomes]
rs1562466	1.00[CEU][hapmap]
rs16831758	1.00[CEU][hapmap]
rs1839014	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1839020	0.85[EUR][1000 genomes]
rs1868104	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1971240	1.00[CEU][hapmap]
rs2028988	1.00[CEU][hapmap]
rs4679667	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs4679925	0.82[EUR][1000 genomes]
rs6441333	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6441334	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441335	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6441336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441342	0.85[EUR][1000 genomes]
rs6441343	0.82[EUR][1000 genomes]
rs6441344	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6770488	0.80[JPT][hapmap]
rs6776120	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs6785844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6787694	1.00[CEU][hapmap]
rs6789195	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6797498	0.80[EUR][1000 genomes]
rs6799391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7610732	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7617759	0.91[CEU][hapmap]
rs7629374	0.83[ASN][1000 genomes]
rs7636886	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs778647	1.00[CEU][hapmap]
rs778650	0.84[CEU][hapmap]
rs796610	1.00[CEU][hapmap]
rs878954	0.83[EUR][1000 genomes]
rs878955	0.82[EUR][1000 genomes]
rs935496	0.95[EUR][1000 genomes]
rs935500	0.85[EUR][1000 genomes]
rs9818081	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv32963	chr3:160555238-160603116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160587400-160593000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:160587600-160588800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:160587800-160588600	Enhancers	Brain Anterior Caudate	brain
4	chr3:160587800-160588600	Active TSS	Right Ventricle	heart
5	chr3:160587800-160588600	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr3:160587800-160589000	Enhancers	Brain Germinal Matrix	brain
7	chr3:160587800-160589000	Enhancers	Colon Smooth Muscle	Colon
8	chr3:160588000-160588600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:160588000-160588600	Active TSS	Psoas Muscle	Psoas
10	chr3:160588000-160588600	Active TSS	Right Atrium	heart
11	chr3:160588200-160594000	Weak transcription	Fetal Heart	heart
12	chr3:160588200-160594400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:160588400-160588600	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr3:160588400-160588600	Flanking Active TSS	HSMMtube	muscle
15	chr3:160588400-160592000	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:160588400-160594000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:160588400-160594000	Weak transcription	Left Ventricle	heart
18	chr3:160588400-160594200	Weak transcription	Stomach Smooth Muscle	stomach

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