Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160472665..160476434-chr3:160627651..160631285,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260572	Chromatin interaction
ENSG00000163590	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12696110	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1348977	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1374795	0.84[EUR][1000 genomes]
rs1447616	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1447617	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1447624	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1839014	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1868106	0.89[EUR][1000 genomes]
rs6441333	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6441334	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6441335	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6441336	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6770488	0.89[EUR][1000 genomes]
rs6776120	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6785844	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6789195	0.87[ASN][1000 genomes]
rs6796612	0.87[EUR][1000 genomes]
rs6799391	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6800092	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7629374	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7636886	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9814174	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv519474	chr3:160620205-160630267	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160621200-160629200	Weak transcription	Psoas Muscle	Psoas
2	chr3:160622000-160628800	Weak transcription	Fetal Brain Male	brain
3	chr3:160622600-160628800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:160625800-160629200	Weak transcription	Left Ventricle	heart
5	chr3:160627400-160628000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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