Variant report

Variant	rs6800092
Chromosome Location	chr3:160643476-160643477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12485723	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12634368	0.82[ASN][1000 genomes]
rs12696110	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374795	0.96[EUR][1000 genomes]
rs1447624	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1839014	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1868106	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4679667	0.91[ASN][1000 genomes]
rs6441335	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6770488	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6776120	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6796612	0.97[EUR][1000 genomes]
rs7629374	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160635400-160644000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:160635400-160649200	Weak transcription	Fetal Brain Female	brain
3	chr3:160636000-160644000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:160638200-160647200	Weak transcription	Right Ventricle	heart
5	chr3:160638400-160643800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:160638400-160643800	Weak transcription	Right Atrium	heart
7	chr3:160639000-160644400	Weak transcription	Fetal Brain Male	brain
8	chr3:160642200-160643600	Weak transcription	Left Ventricle	heart
9	chr3:160642200-160643600	Weak transcription	Psoas Muscle	Psoas
10	chr3:160642400-160644000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:160642400-160647200	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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