Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160585047..160587400-chr3:160591174..160594154,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12485723	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12696110	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1348977	0.83[ASN][1000 genomes]
rs1374795	0.82[EUR][1000 genomes]
rs1447616	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1447617	0.86[ASN][1000 genomes]
rs1447624	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1868106	0.86[EUR][1000 genomes]
rs6441333	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6441334	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6441335	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6441336	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6770488	0.86[EUR][1000 genomes]
rs6776120	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6785844	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6789195	0.80[ASN][1000 genomes]
rs6796612	0.84[EUR][1000 genomes]
rs6799391	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6800092	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7629374	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7636886	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9814174	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv32963	chr3:160555238-160603116	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160587400-160593000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:160588200-160594000	Weak transcription	Fetal Heart	heart
3	chr3:160588200-160594400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:160588400-160592000	Weak transcription	Fetal Muscle Leg	muscle
5	chr3:160588400-160594000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr3:160588400-160594000	Weak transcription	Left Ventricle	heart
7	chr3:160588400-160594200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:160588600-160594000	Weak transcription	Right Atrium	heart
9	chr3:160588600-160594400	Weak transcription	Right Ventricle	heart
10	chr3:160589000-160596000	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:160589200-160594000	Weak transcription	Brain Anterior Caudate	brain
12	chr3:160590000-160592200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:160591400-160591600	Enhancers	Fetal Muscle Trunk	muscle
14	chr3:160591400-160591800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr3:160591400-160592800	Enhancers	Psoas Muscle	Psoas

Quick Search: