Variant report

Variant	rs7617759
Chromosome Location	chr3:160684720-160684721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160680508..160683340-chr3:160683641..160685438,2	MCF-7	breast:
2	chr3:160683839..160685876-chr3:160685916..160688095,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10513558	0.91[CEU][hapmap];0.81[CHB][hapmap]
rs11709802	0.91[CEU][hapmap];0.80[CHB][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs12496196	0.91[CEU][hapmap]
rs12498008	0.91[CEU][hapmap];0.91[YRI][hapmap]
rs13079358	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1348977	0.91[CEU][hapmap]
rs1447617	0.91[CEU][hapmap]
rs1562466	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs16831758	0.91[CEU][hapmap];0.91[YRI][hapmap]
rs1868104	0.91[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap]
rs1971240	0.91[CEU][hapmap]
rs2028988	0.91[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.81[ASN][1000 genomes]
rs28444697	0.82[AMR][1000 genomes]
rs4679667	0.91[CEU][hapmap];0.91[YRI][hapmap]
rs56990390	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6441334	0.91[CEU][hapmap]
rs6441336	0.91[CEU][hapmap]
rs6441344	0.88[CEU][hapmap]
rs6785844	0.91[CEU][hapmap]
rs6787694	0.91[CEU][hapmap]
rs6789195	0.91[CEU][hapmap]
rs6797498	0.81[CHB][hapmap]
rs6799391	0.91[CEU][hapmap]
rs73158252	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73158257	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7610732	0.91[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7619552	0.81[ASN][1000 genomes]
rs7629001	0.80[ASN][1000 genomes]
rs7653744	0.81[ASN][1000 genomes]
rs778647	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs796610	0.91[CEU][hapmap];0.91[YRI][hapmap]
rs9814174	0.91[CEU][hapmap]
rs9818081	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	esv3462791	chr3:160680085-160686174	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3462792	chr3:160680137-160686148	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3462790	chr3:160680198-160686110	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3462793	chr3:160680198-160686110	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv16422	chr3:160680271-160685991	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv517658	chr3:160681614-160684720	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv592130	chr3:160681614-160685894	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv592131	chr3:160682296-160685788	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv592132	chr3:160682296-160685894	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv592133	chr3:160682500-160685753	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv592134	chr3:160682500-160685894	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv592135	chr3:160682500-160689164	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160667400-160696000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:160670200-160686600	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:160670400-160686400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:160670400-160700400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:160678400-160697600	Weak transcription	Primary T cells from cord blood	blood
6	chr3:160679000-160686600	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:160681000-160686600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:160681600-160684800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:160682400-160686600	Weak transcription	Left Ventricle	heart
10	chr3:160683600-160684800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:160683800-160687000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:160684400-160685200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:160684600-160685400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr3:160684600-160689200	Weak transcription	Dnd41	blood

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