Variant report

Variant	rs9818081
Chromosome Location	chr3:160747692-160747693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160746924..160750622-chr3:160787755..160791172,3	MCF-7	breast:
2	chr3:160739507..160741947-chr3:160747617..160749551,2	MCF-7	breast:
3	chr3:160746769..160748964-chr3:160821024..160822898,2	MCF-7	breast:
4	chr3:160745725..160748261-chr3:160752866..160755134,2	MCF-7	breast:
5	chr3:160747461..160750414-chr3:161128370..161130411,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169251	Chromatin interaction
ENSG00000169255	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10513558	1.00[CEU][hapmap]
rs10513560	0.82[CHB][hapmap];0.86[CHD][hapmap];0.93[JPT][hapmap]
rs11709802	1.00[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12496196	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12498008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13079358	0.90[CEU][hapmap]
rs13325518	0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1348977	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs1374786	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1447617	1.00[CEU][hapmap]
rs1530635	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1530636	0.82[CHB][hapmap];0.86[CHD][hapmap];0.93[JPT][hapmap]
rs1562465	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs1562466	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1599382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16831756	0.95[ASN][1000 genomes]
rs16831757	0.94[ASN][1000 genomes]
rs16831758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1868104	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs1903422	0.95[ASN][1000 genomes]
rs1971240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2028988	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2061580	1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4608736	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4679667	1.00[CEU][hapmap]
rs4679927	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56990390	0.80[ASN][1000 genomes]
rs57009978	0.96[ASN][1000 genomes]
rs58189630	0.87[ASN][1000 genomes]
rs59483687	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60875417	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62282273	0.95[ASN][1000 genomes]
rs6441334	1.00[CEU][hapmap]
rs6441336	1.00[CEU][hapmap]
rs6441344	1.00[CEU][hapmap]
rs6441345	0.82[CHB][hapmap];0.89[CHD][hapmap];0.93[JPT][hapmap]
rs6763532	0.85[JPT][hapmap]
rs6774203	0.82[CHB][hapmap];0.89[CHD][hapmap];0.87[JPT][hapmap]
rs6785844	1.00[CEU][hapmap]
rs6787694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6789195	0.89[ASW][hapmap];1.00[CEU][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap]
rs6797498	0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs6798966	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6799391	1.00[CEU][hapmap]
rs73158252	0.80[ASN][1000 genomes]
rs73158255	0.95[ASN][1000 genomes]
rs73158257	0.80[ASN][1000 genomes]
rs7610732	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7617759	0.91[CEU][hapmap]
rs7619552	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7629001	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7653744	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778644	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778650	0.81[ASW][hapmap];0.84[CEU][hapmap];0.87[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778651	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs778652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs778655	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs778656	0.86[ASN][1000 genomes]
rs778658	0.83[ASN][1000 genomes]
rs778661	0.83[ASN][1000 genomes]
rs778662	0.86[ASN][1000 genomes]
rs796610	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs814092	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs878954	0.80[EUR][1000 genomes]
rs898676	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs898678	0.97[ASN][1000 genomes]
rs898679	0.94[ASN][1000 genomes]
rs9814174	1.00[CEU][hapmap]
rs9850546	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9858335	0.84[CHD][hapmap]
rs9879296	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160745200-160748800	Weak transcription	Placenta	Placenta
2	chr3:160745200-160782600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:160746400-160747800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:160746600-160749000	Weak transcription	Psoas Muscle	Psoas
5	chr3:160747600-160748200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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