Variant report

Variant	rs778656
Chromosome Location	chr3:160718683-160718684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160717602..160719198-chr3:160748866..160750938,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10513560	0.89[ASN][1000 genomes]
rs10936216	0.89[ASN][1000 genomes]
rs12498008	0.90[ASN][1000 genomes]
rs13325518	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1374786	1.00[ASN][1000 genomes]
rs1447609	0.88[ASN][1000 genomes]
rs1530635	1.00[ASN][1000 genomes]
rs1530636	0.89[ASN][1000 genomes]
rs1562465	0.89[ASN][1000 genomes]
rs1562466	1.00[ASN][1000 genomes]
rs1599382	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16831756	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16831757	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16831758	0.87[ASN][1000 genomes]
rs1903422	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1971240	0.90[ASN][1000 genomes]
rs2061580	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2889391	0.89[ASN][1000 genomes]
rs34462546	0.88[ASN][1000 genomes]
rs4608736	0.98[ASN][1000 genomes]
rs4679927	1.00[ASN][1000 genomes]
rs57009978	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58189630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59483687	0.82[ASN][1000 genomes]
rs60875417	0.87[ASN][1000 genomes]
rs62282273	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441345	0.89[ASN][1000 genomes]
rs6441346	0.89[ASN][1000 genomes]
rs6763532	0.89[ASN][1000 genomes]
rs6770180	0.89[ASN][1000 genomes]
rs6774203	0.88[ASN][1000 genomes]
rs6787694	1.00[ASN][1000 genomes]
rs6798966	0.96[ASN][1000 genomes]
rs73158255	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs778644	1.00[ASN][1000 genomes]
rs778647	1.00[ASN][1000 genomes]
rs778650	1.00[ASN][1000 genomes]
rs778651	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778652	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778655	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778658	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778661	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs796610	1.00[ASN][1000 genomes]
rs814092	1.00[ASN][1000 genomes]
rs898676	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs898678	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs898679	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9818081	0.86[ASN][1000 genomes]
rs9850546	0.88[ASN][1000 genomes]
rs9879296	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160705000-160720000	Weak transcription	Gastric	stomach
2	chr3:160718200-160718800	Enhancers	HUES64 Cell Line	embryonic stem cell

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