Variant report

Variant	rs778651
Chromosome Location	chr3:160713529-160713530
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160701391..160703637-chr3:160711563..160713672,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10513558	0.87[JPT][hapmap]
rs10513560	0.82[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs10936216	0.89[ASN][1000 genomes]
rs11709802	0.81[JPT][hapmap]
rs12494673	0.87[JPT][hapmap]
rs12494844	0.82[CEU][hapmap]
rs12496196	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs12498008	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs13318781	0.82[CEU][hapmap]
rs13325518	0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1374786	1.00[ASN][1000 genomes]
rs1447609	0.88[ASN][1000 genomes]
rs1447624	0.87[JPT][hapmap]
rs1530635	1.00[ASN][1000 genomes]
rs1530636	0.82[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs1562465	0.83[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs1562466	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs1580254	0.80[JPT][hapmap]
rs1599382	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16831756	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16831757	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16831758	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1868104	0.81[JPT][hapmap]
rs1903422	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1971240	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2028988	0.81[JPT][hapmap]
rs2061580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2889391	0.89[ASN][1000 genomes]
rs34462546	0.88[ASN][1000 genomes]
rs4490410	0.82[CEU][hapmap]
rs4608736	0.98[ASN][1000 genomes]
rs4679927	1.00[ASN][1000 genomes]
rs57009978	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58189630	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59483687	0.82[ASN][1000 genomes]
rs60875417	0.87[ASN][1000 genomes]
rs62282273	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441345	0.82[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs6441346	0.89[ASN][1000 genomes]
rs6763532	0.80[CHB][hapmap];0.89[ASN][1000 genomes]
rs6770180	0.89[ASN][1000 genomes]
rs6774203	0.82[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs6787694	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs6797498	0.81[JPT][hapmap]
rs6798966	0.96[ASN][1000 genomes]
rs6808386	0.81[JPT][hapmap]
rs731363	0.88[CEU][hapmap]
rs73158255	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7610732	0.81[JPT][hapmap]
rs7613316	0.81[JPT][hapmap]
rs7616249	0.81[JPT][hapmap]
rs7635796	0.81[JPT][hapmap]
rs7640874	0.81[JPT][hapmap]
rs7644586	0.81[JPT][hapmap]
rs778644	1.00[ASN][1000 genomes]
rs778647	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs778650	0.87[CHB][hapmap];0.81[JPT][hapmap];1.00[ASN][1000 genomes]
rs778652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778655	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778656	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778658	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778661	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778662	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs796610	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[ASN][1000 genomes]
rs814092	1.00[ASN][1000 genomes]
rs898676	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs898678	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs898679	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs898682	0.81[JPT][hapmap]
rs9818081	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs9825118	0.81[CEU][hapmap]
rs9839984	0.80[JPT][hapmap]
rs9840600	0.81[JPT][hapmap]
rs9846316	0.87[CEU][hapmap]
rs9850546	0.88[ASN][1000 genomes]
rs9857743	0.81[JPT][hapmap]
rs9858335	0.80[JPT][hapmap]
rs9860182	0.80[JPT][hapmap]
rs9879296	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1007004	chr3:160695108-160718154	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160705000-160720000	Weak transcription	Gastric	stomach
2	chr3:160706400-160716000	Weak transcription	Primary T cells from cord blood	blood

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