Variant report

Variant	rs6763532
Chromosome Location	chr3:160701816-160701817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160701391..160703637-chr3:160711563..160713672,2	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10513560	0.87[CHB][hapmap];0.93[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10936216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12496196	0.86[JPT][hapmap]
rs12498008	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs13325518	0.85[JPT][hapmap]
rs1374786	0.89[ASN][1000 genomes]
rs1374787	0.85[EUR][1000 genomes]
rs1447608	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1447609	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1530635	0.89[ASN][1000 genomes]
rs1530636	0.87[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562465	0.88[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562466	0.85[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1580253	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1580254	0.85[JPT][hapmap];0.85[AMR][1000 genomes]
rs1599382	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs16831758	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs1868109	0.82[EUR][1000 genomes]
rs1971240	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs2061580	0.85[JPT][hapmap]
rs2121721	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2376476	0.85[EUR][1000 genomes]
rs2376477	0.86[EUR][1000 genomes]
rs2889391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34462546	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34884182	0.84[AMR][1000 genomes]
rs4608736	0.87[ASN][1000 genomes]
rs4679927	0.89[ASN][1000 genomes]
rs4679928	0.85[EUR][1000 genomes]
rs58189630	0.88[ASN][1000 genomes]
rs6441345	0.87[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769927	0.85[AMR][1000 genomes]
rs6770180	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774203	0.87[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6787694	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs6791375	0.83[AMR][1000 genomes]
rs6798966	0.87[ASN][1000 genomes]
rs6808311	0.85[AMR][1000 genomes]
rs6808386	0.93[EUR][1000 genomes]
rs7611005	0.84[EUR][1000 genomes]
rs7613316	0.93[EUR][1000 genomes]
rs7616249	0.95[EUR][1000 genomes]
rs7626904	0.86[EUR][1000 genomes]
rs7626985	0.87[EUR][1000 genomes]
rs7635796	0.93[EUR][1000 genomes]
rs7640874	0.87[EUR][1000 genomes]
rs7644586	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs778644	0.89[ASN][1000 genomes]
rs778647	0.80[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs778650	0.89[ASN][1000 genomes]
rs778651	0.80[CHB][hapmap];0.89[ASN][1000 genomes]
rs778652	0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs778655	0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs778656	0.89[ASN][1000 genomes]
rs778658	0.87[ASN][1000 genomes]
rs778661	0.86[ASN][1000 genomes]
rs778662	0.89[ASN][1000 genomes]
rs796610	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs814092	0.89[ASN][1000 genomes]
rs898676	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs898682	0.82[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9813700	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9818081	0.85[JPT][hapmap]
rs9839984	0.85[JPT][hapmap];0.84[AMR][1000 genomes]
rs9840600	0.82[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9846254	0.81[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9857743	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9858335	0.85[JPT][hapmap];0.85[AMR][1000 genomes]
rs9860182	0.81[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9873705	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv1007004	chr3:160695108-160718154	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160697000-160704000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:160697200-160710600	Weak transcription	Left Ventricle	heart
3	chr3:160700000-160702000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:160701200-160703400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr3:160701200-160703600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:160701200-160704000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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