Variant report

Variant	rs1839020
Chromosome Location	chr3:160658627-160658628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10513558	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11709802	0.91[EUR][1000 genomes]
rs12635022	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13079792	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13086445	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1348977	0.87[EUR][1000 genomes]
rs1374786	0.86[EUR][1000 genomes]
rs1447616	0.87[EUR][1000 genomes]
rs1447617	0.87[EUR][1000 genomes]
rs1530635	0.86[EUR][1000 genomes]
rs1562466	0.86[EUR][1000 genomes]
rs1868104	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2028988	0.90[EUR][1000 genomes]
rs4608736	0.84[EUR][1000 genomes]
rs4679667	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4679925	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4679927	0.86[EUR][1000 genomes]
rs6441333	0.86[EUR][1000 genomes]
rs6441334	0.87[EUR][1000 genomes]
rs6441336	0.87[EUR][1000 genomes]
rs6441342	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441343	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6441344	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6785844	0.87[EUR][1000 genomes]
rs6787694	0.86[EUR][1000 genomes]
rs6789195	0.88[EUR][1000 genomes]
rs6796612	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6797498	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6799391	0.87[EUR][1000 genomes]
rs6800013	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7610732	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7619552	0.92[EUR][1000 genomes]
rs7629001	0.92[EUR][1000 genomes]
rs7636886	0.87[EUR][1000 genomes]
rs7653744	0.92[EUR][1000 genomes]
rs778644	0.86[EUR][1000 genomes]
rs778647	0.86[EUR][1000 genomes]
rs778650	0.86[EUR][1000 genomes]
rs796610	0.86[EUR][1000 genomes]
rs814092	0.86[EUR][1000 genomes]
rs878954	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs878955	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs935496	0.80[EUR][1000 genomes]
rs935500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9814174	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160653600-160659000	Weak transcription	Liver	Liver
2	chr3:160658600-160658800	ZNF genes & repeats	Thymus	Thymus

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