Variant report

Variant	rs12491383
Chromosome Location	chr3:21081644-21081645
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13058856	0.84[EUR][1000 genomes]
rs13059049	0.83[EUR][1000 genomes]
rs13066163	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13069655	0.87[EUR][1000 genomes]
rs13072255	0.84[EUR][1000 genomes]
rs13072899	0.84[EUR][1000 genomes]
rs2173233	0.91[EUR][1000 genomes]
rs61551252	0.89[ASN][1000 genomes]
rs6767465	0.84[AFR][1000 genomes]
rs6778353	0.84[AFR][1000 genomes]
rs7629155	0.80[AFR][1000 genomes]
rs7640595	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9310635	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9825481	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9835409	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9835881	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876607	chr3:20972475-21087219	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv876608	chr3:21008710-21203048	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv998068	chr3:21050191-21212603	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2422219	chr3:21064893-21220097	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21081200-21081800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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