Variant report

Variant	rs2173233
Chromosome Location	chr3:21058911-21058912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12491383	0.91[EUR][1000 genomes]
rs13058856	0.84[EUR][1000 genomes]
rs13059049	0.83[EUR][1000 genomes]
rs13066163	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13067129	0.96[ASN][1000 genomes]
rs13069655	0.82[EUR][1000 genomes]
rs13072255	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13072899	0.92[ASN][1000 genomes]
rs9825481	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876607	chr3:20972475-21087219	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	nsv876608	chr3:21008710-21203048	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1014809	chr3:21024655-21060336	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv998068	chr3:21050191-21212603	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21055200-21059000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:21058400-21059600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:21058600-21059200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:21058600-21059400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:21058600-21059400	Enhancers	Placenta	Placenta
6	chr3:21058600-21059800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:21058800-21059400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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