Variant report

Variant	rs1249344
Chromosome Location	chr10:28626462-28626463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10826453	0.80[ASN][1000 genomes]
rs11007029	0.83[ASN][1000 genomes]
rs1249330	0.81[ASN][1000 genomes]
rs1249332	0.81[ASN][1000 genomes]
rs1249333	0.83[ASN][1000 genomes]
rs1249340	0.82[AFR][1000 genomes]
rs1840875	0.81[ASN][1000 genomes]
rs1840876	0.81[ASN][1000 genomes]
rs4747618	0.81[ASN][1000 genomes]
rs4749318	0.81[ASN][1000 genomes]
rs703022	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs703023	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs703024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs786400	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28618800-28626600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:28624400-28626800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr10:28624400-28626800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr10:28624400-28628200	Weak transcription	Placenta	Placenta
5	chr10:28624600-28626600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr10:28625000-28627000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr10:28626400-28627600	Weak transcription	Primary T cells from cord blood	blood
8	chr10:28626400-28628000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:28626400-28628000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr10:28626400-28628200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:28626400-28628200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:28626400-28631600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:28626400-28631800	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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