Variant report

Variant	rs786400
Chromosome Location	chr10:28625037-28625038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1249344	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs703022	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs703023	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs703024	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28618800-28626600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:28621600-28625600	Enhancers	Fetal Thymus	thymus
3	chr10:28623200-28625600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:28624000-28626000	Enhancers	Primary B cells from cord blood	blood
5	chr10:28624200-28625400	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:28624200-28626200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:28624200-28626400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:28624200-28626400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:28624400-28625400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:28624400-28625400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:28624400-28626400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:28624400-28626400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr10:28624400-28626800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr10:28624400-28626800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr10:28624400-28628200	Weak transcription	Placenta	Placenta
16	chr10:28624600-28625200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:28624600-28626400	Enhancers	Primary T cells from cord blood	blood
18	chr10:28624600-28626600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr10:28625000-28625400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:28625000-28626400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr10:28625000-28626400	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr10:28625000-28626400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:28625000-28626400	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr10:28625000-28627000	Enhancers	Primary T helper cells fromperipheralblood	blood

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